SASSIE: A program to study intrinsically disordered biological molecules and macromolecular ensembles using experimental scattering restraints J. E. Curtis, S. Raghunandan, H. Nanda, S. Krueger, Comp. Phys. Comm. 183, 382-389 (2012). BIBTeX, EndNote, Plain Text
Note that the documentation pages for each module include these papers and others that you may consider citing. The primary reference for a majority of modules is the main SASSIE paper listed above.
Small-angle scattering contrast calculator for protein and nucleic acid complexes in solution K.L. Sarachan, J. E. Curtis, S. Krueger, J. Appl. Cryst. 46 1889-1893 (2013). BIBTeX, EndNote, Plain Text
Rapid and accurate calculation of small-angle scattering profiles using the golden ratio M.C. Watson, J.E. Curtis, J. Appl. Crystallogr. 46, 1171-1177 (2013)). BIBTeX, EndNote, Plain Text
SLDMOL: A tool for the structural characterization of thermally disordered membrane proteins
J. E. Curtis, H. Zhang, H. Nanda, Comp. Phys. Comm. 185, 3010-3015 (2014). BIBTex EndNote Plain Text
PDB2PQR: an automated pipeline for the setup, execution, and analysis of Poisson-Boltzmann electrostatics calculations T. J. Dolinsky, J. E. Nielsen, J. A. McCammon, N. A. Baker, Nucleic Acids Res, 32, W665-W667, (2004). BIBTeX, EndNote, Plain Text
Application of torsion angle molecular dynamics for efficient sampling of protein conformations J. Chen, W. Im, C. L. Brooks III, J. Comput. Chem. 26 1565-1578 (2005). BIBTeX, EndNote, Plain Text
CRYSOL – a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates D. I. Svergun D.I., C. Barberato, M. H. J. Koch, J. Appl. Cryst. 28, 768-773 (1995). BIBTeX, EndNote, Plain Text
ProDy: Protein Dynamics Inferred from Theory and Experiments A. Bakan, L.M. Meireles, I. Bahar, Bioinformatics 27, 1575-1577 (2011). BIBTeX, EndNote, Plain Text